Whole genome sequencing in clinical and public health microbiology.

Authors:
Kwong JC; McCallum N; Sintchenko V; Howden BP.

Journal:
Pathology

Publication Year: 2015

DOI:
10.1097/PAT.0000000000000235

PMCID:
PMC4389090

PMID:
25730631

View on PubMed View on PMC View Publisher
Journal Information

Full Title: Pathology

Abbreviation: Pathology

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Pathology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

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Evidence found in paper:

"multiple tools are available 77 and are frequently incorporated into more automated software packages o we use the nesoni suite of tools ( http://www vicbioinformatics com/software nesoni shtml ) as well as samtools ( http://samtools sourceforge net/ ) freebayes ( https://github com/ekg/freebayes ) and nucmer (part of mummer)."

Evidence found in paper:

"Conflicts of interest and sources of funding: The authors state that there are no conflicts of interest to disclose."

Evidence found in paper:

"JCK is supported by a postgraduate scholarship from the National Health and Medical Research Council (NHMRC), Australia (APP1074824). BPH is supported by a NHMRC fellowship (APP1023526)."

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Last Updated: Aug 05, 2025