Further resolution of the house mouse (Mus musculus) phylogeny by integration over isolation-with-migration histories.

"input files output files and commands for the ima3 analysis of the random sample of 200 loci and for the re-analysis of the nuclear loci from geraldes et al [ 27 ] have been deposited in dryad (accessible under: doi:10 5061/dryad qrfj6q5cp)."

"Competing interests The authors declare no competing interests."

"Funding This work was supported by an Extreme Science and Engineering Discovery Environment (XSEDE) allocation to MPR (MCB180131). XSEDE is supported by National Science Foundation grant number ACI-1548562. MPR was funded by a University Faculty Fellowship, Monmouth University. J.H. was supported by National Science Foundation grant 1564659 (PI Arun Sethuraman) and National Institutes of Health grant S10OD020095 (PI Ronald Levy), and computation on Temple University’s HPC was supported by National Science Foundation grant 1625061 and by US Army Research Laboratory contract W911NF-16-2-0189. The funding sources played no role in the design of the study, collection, analysis, and interpretation of data or in writing the manuscript."