A cookbook for DNase Hi-C.

"the scripts that we used for hi-c data processing and quality analysis are available on github https://github com/evgeniy240294/exoc .; the scripts used for data processing and analysis are available on github: https://github com/evgeniy240294/exoc and https://github com/regnveig/labjournal/tree/master/tools/fastcontext ."

"the scripts that we used for hi-c data processing and quality analysis are available on github https://github com/evgeniy240294/exoc .; the scripts used for data processing and analysis are available on github: https://github com/evgeniy240294/exoc and https://github com/regnveig/labjournal/tree/master/tools/fastcontext ."

"Declarations Ethics approval and consent to participateThis study was performed in line with the principles of the Declaration of Helsinki. Approval was granted by the local Research Ethics Committee of the Research Institute of Medical Genetics, Tomsk National Research Medical Center (Date 27.07.2017/No 106). All the study participants provided informed consent. Consent for publicationNot applicable. Competing interestsThe authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests."

"Funding DNAse I Hi-C library preparation and sequencing were supported by RFBR Grant 18-29-13021. Data analysis performed by E.M. was supported by RFBR Grant 20-34-90110. High-throughput computations were performed on the nodes of the computational cluster of the Institute of Cytology and Genetics SB RAS (budget project no. 0259-2021-0016)."