Complete genome sequences and genomic characterization of five plasmids harbored by environmentally persistent Cronobacter sakazakii strains ST83 H322 and ST64 GK1025B obtained from powdered infant formula manufacturing facilities.

Authors:
Negrete FJ; Ko K; Jang H; Hoffmann M; Lehner A and 4 more

Journal:
Gut Pathog

Publication Year: 2022

DOI:
10.1186/s13099-022-00500-5

PMCID:
PMC9169379

PMID:
35668537

Journal Information

Full Title: Gut Pathog

Abbreviation: Gut Pathog

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Gastroenterology & Hepatology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Evidence found in paper:

"the prokaryotic genome annotation pipeline (pgap) annotations [ ] of these completed genomes plasmid sequences and their accession numbers were released under fda genometrakr bioproject on ncbi (prjna258403) which is part of fda's foodborne pathogen research comprehensive bioproject at ncbi (prjna186875).; in addition to the closed plasmids generated from long-read sequencing phaster analysis showed that c sakazakii strain h322 hosted four intact prophage sequences (additional file 2 : table s2) that were located on the chromosome which included a 47 4 kbp salmonella sen34 (ncbi accession #: nc_028699) a 37 4 kbp enterobacteria mep235 (nc_019708) a 43 5 kbp salmonella 118970_sal3 (nc_031940) and a 17 7 kbp enterobacteria p1 (nc_005856) prophage."

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Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationYes. Competing interestsThe authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests."

Evidence found in paper:

"Funding Funds supporting this work were obtained internally through U.S. FDA appropriations, and the University of Maryland, Joint Institute for Food Safety and Applied Nutrition (JIFSAN) that supported FN and KK through a cooperative agreement with the FDA (#FDU001418). Moreover, funding for research fellow HJ was provided by Oak Ridge Institute for Science and Education of Oak Ridge, Tennessee."

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Last Updated: Aug 05, 2025