Tracking the turnover of SARS-CoV-2 VOCs Gamma to Delta in a Brazilian state (Minas Gerais) with a high-vaccination status.

"data and code used for this analysis are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil -- supplementary material 1 ) 2 4 to explore the clinical outcome of sars-cov-2 cases classified as delta by genotyping/sequencing epidemiological data of approximately 56 per cent ( n = 697) were obtained through ses-mg using the databases sistema de informacoes de vigilancia epidemiologica and e-sus respecting patient data protection laws.; the pangolin lineage report and the complete nextclade analysis outputs are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil -- supplementary material 2 ) 3 5 we assembled two different data sets generated under distinct sampling schemes to assess the dynamics of the introduction of voc delta in mg."

"data and code used for this analysis are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil -- supplementary material 1 ) 2 4 to explore the clinical outcome of sars-cov-2 cases classified as delta by genotyping/sequencing epidemiological data of approximately 56 per cent ( n = 697) were obtained through ses-mg using the databases sistema de informacoes de vigilancia epidemiologica and e-sus respecting patient data protection laws.; the code for the described pipeline is available on github ( https://github com/filiperomero2/viralunity ).; the pangolin lineage report and the complete nextclade analysis outputs are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil -- supplementary material 2 ) 3 5 we assembled two different data sets generated under distinct sampling schemes to assess the dynamics of the introduction of voc delta in mg.; all annotated trees beast xml and log files generated in these analyses are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil and supplementary material 3 ) 4. data and code used for this analysis are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil -- supplementary material 1 ) 2 4 to explore the clinical outcome of sars-cov-2 cases classified as delta by genotyping/sequencing epidemiological data of approximately 56 per cent ( n = 697) were obtained through ses-mg using the databases sistema de informacoes de vigilancia epidemiologica and e-sus respecting patient data protection laws.; the pangolin lineage report and the complete nextclade analysis outputs are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil -- supplementary material 2 ) 3 5 we assembled two different data sets generated under distinct sampling schemes to assess the dynamics of the introduction of voc delta in mg.; all annotated trees beast xml and log files generated in these analyses are available on our github page ( https://github com/lbi-lab/establishment-voc-delta-in-minas-gerais-brazil and supplementary material 3 ) 4."

"Conflict of interest: We declare no conflicts of interest."

"Funding We acknowledge support from the Rede Corona-ômica BR MCTI/FINEP affiliated to RedeVírus/MCTI (FINEP 01.20.0029.000462/20 and CNPq 404096/2020-4). This project was also supported by CNPq (R.S.A.: 312688/2017-2 and 439119/2018-9; R.P.S.: 310627/2018-4), MEC/CAPES 118 (14/2020 23072.211119/2020-10), FINEP (0494/20 01.20.0026.00), UFMG-NB3, FINEP no 1139/20 (RSA), FAPEMIG (R.P.S.: APQ-00475-20), and FAPERJ (C.M.V: 26/010.002278/2019) (R.S.A: 202.922/2018) and by CADDE/FAPESP (MR/S0195/1 and FAPESP 120 18/14389-0) (N.R.F.). N.R.F. acknowledges support from the Wellcome Trust and the Royal Society (Sir Henry Dale Fellowship. 204311/Z/16/Z), Medical Research Council-São Paulo Research Foundation (FAPESP) CADDE partnership award (MR/S0195/1 and FAPESP18/143890) (https://caddecentre.org), and the Bill & Melinda Gates Foundation (INV-034540 and INV-034652). D.S.C. acknowledges support from the Clarendon Fund, the University of Oxford Department of Zoology, and Merton College."