Fast-forwarding evolution-Accelerated adaptation in a proofreading-deficient hypermutator herpesvirus.

Publication Year: 2022

DOI:
10.1093/ve/veac099

PMCID:
PMC9671156

PMID:
36405341

Journal Information

Full Title: Virus Evol

Abbreviation: Virus Evol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Virology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Core Indicators
Evidence found in paper:

"raw sequencing data and alignments are available at the national center for biotechnology information (ncbi) short read archive bioproject prjna854607.; data availability raw sequencing data and alignments are available at the ncbi short read archive bioproject prjna854607. custom code used for data analysis is available at github ( https://github com/mmnascimento/fastforwardingevolution ). data availability raw sequencing data and alignments are available at the ncbi short read archive bioproject prjna854607"

Evidence found in paper:

"all snp-containing orfs sequences were extracted from these consensus genomes and translated using a custom-made script (available at https://github com/mmnascimento/fastforwardingevolution ).; a version of the notebook complete with recorded variables and outputs from the analysis performed here (mdv_protein_analysis ipynb) is also available on github.; custom code used for data analysis is available at github ( https://github com/mmnascimento/fastforwardingevolution )."

Evidence found in paper:

"Conflict of interest: None declared."

Evidence found in paper:

"We are grateful to Ann Reum, Annett Neubert, and Laurie Molitor for excellent technical assistance. We thank Dr. Michael Veit for providing T7 chicken intestinal epithelial cells. T.H., N.O., and D.P.M. were supported by the Volkswagenstiftung (Grant No. 96692)."

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Open Access
Paper is freely available to read
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Replication
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Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025