Haplotype assignment of longitudinal viral deep sequencing data using covariation of variant frequencies.

Authors:
Venturini C; Pang J; Tamuri AU; Roy S; Atkinson C and 3 more

Journal:
Virus Evol

Publication Year: 2022

DOI:
10.1093/ve/veac093

PMCID:
PMC9719071

PMID:
36478783

Journal Information

Full Title: Virus Evol

Abbreviation: Virus Evol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Virology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Evidence found in paper:

"funding this study was supported by wellcome trust collaborative awards203268 and 204870 awarded to j b rosetrees trust phd studentship m876 awarded to j p and medical research council grant mc_u117573805 awarded to r a g data and software availability the software harold and other materials used are available in the github repository https://github com/ucl-pathgenomics/harold ."

Evidence found in paper:

"funding this study was supported by wellcome trust collaborative awards203268 and 204870 awarded to j b rosetrees trust phd studentship m876 awarded to j p and medical research council grant mc_u117573805 awarded to r a g data and software availability the software harold and other materials used are available in the github repository https://github com/ucl-pathgenomics/harold ."

Evidence found in paper:

"Conflict of interest: None declared."

Evidence found in paper:

"Funding This study was supported by Wellcome Trust Collaborative Awards 203268 and 204870 awarded to J.B., Rosetrees Trust PhD Studentship M876 awarded to J.P., and Medical Research Council Grant MC_U117573805 awarded to R.A.G."

Protocol Registration
Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

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Last Updated: Aug 05, 2025