<i>M</i> <i>ycobacterium avium</i> complex genomics and transmission in a London hospital.

"sequencing reads were deposited in the european nucleotide archive under project prjeb21813 ( supplementary file s2 ).; shareable pdf erj-01237-2022 shareable sequencing reads have been deposited in the european nucleotide archive under project prjeb21813 ( supplementary file s2 )."

"Conflict of interest: J. Parkhill received consulting fees from and holds stock in Next Gen Diagnostics LLC. M.R. Loebinger received consulting fees from Savara, AstraZeneca, Insmed, Grifols, Zambon, Armarta and 30T, and received honoraria from Insmed and Grifols. No other authors have potential competing interests."

"Support statement: This project was supported by the Asmarley Trust, the Wellcome Trust and the NIHR Respiratory Disease Biomedical Research Unit at the Royal Brompton and Harefield NHS Foundation Trust, Imperial College London. H.C. Ellis’ CRF was funded by a grant from the Welton Foundation. K. Kumar's Clinical PhD was supported by a Lee Family Endowment. Funding information for this article has been deposited with the Crossref Funder Registry."