covSampler: A subsampling method with balanced genetic diversity for large-scale SARS-CoV-2 genome data sets.

Authors:
Cheng Y; Ji C; Han N; Li J; Xu L and 4 more

Journal:
Virus Evol

Publication Year: 2022

DOI:
10.1093/ve/veac071

PMCID:
PMC9384632

PMID:
36533145

Journal Information

Full Title: Virus Evol

Abbreviation: Virus Evol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Virology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
Transparency Indicators
Click on green indicators to view evidence text
Core Indicators
Data Sharing
Evidence found in paper:

"the related scripts were written in python and r and are available in our github repository ( https://github com/wuaipinglab/covsampler ).; the source code of covsampler is released at github under an mit license ( https://github com/wuaipinglab/covsampler )."

Evidence found in paper:

"Conflict of interest: None declared."

Evidence found in paper:

"Funding We appreciate the support we received from National key research and development program (2021YFC2301300); the CAMS Innovation Fund for Medical Sciences (2021-I2M-1-061); the National Natural Science Foundation of China (92169106); the special research fund for central universities, Peking Union Medical College (2021-PT180-001); China postdoctoral science foundation grants (2019M660548 and 2020T130007ZX); Suzhou science and technology development plan (szs2020311); and the Youthful Teacher Project of Peking Union Medical College (3332019114). Funding for open access charge: CAMS Innovation Fund for Medical Sciences."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025