bayroot: Bayesian sampling of HIV-1 integration dates by root-to-tip regression.

"data availability the r package bayroot is publicly available under the mit license at https://github com/poonlab/bayroot ."

"all source code is publicly available under the mit license at https://github com/poonlab/bayroot 2 3 to validate the above method we used the r package twt ('treeswithintrees' https://github com/poonlab/twt ) to simulate cell population dynamics forward in time and then to simulate trees by sampling lineages backwards in time to their common ancestors.; data availability the r package bayroot is publicly available under the mit license at https://github com/poonlab/bayroot .; the r package twt is publicly available under the gnu affero general public license v3 0 (agpl-3 0) at https://github com/poonlab/twt ."