Acquisition of a Lexicon for Family History Information: Bidirectional Encoder Representations From Transformers-Assisted Sublanguage Analysis.

"abbreviations bert bidirectional encoder representations from transformers cui concept unique identifier ehr electronic health record fair findable accessible interoperable and reusable fh family history fhir fast healthcare interoperability resource fm family member fn false negative n2c2 2019 nlp clinical challenge nlp natural language processing ohnlp open health natural language processing pure princeton university relation extraction rite reproducible implementable transparent and explainable sfcp standardization framework for clinical problems snomed-ct systematized nomenclature of medicine clinical terms tp true positive umls unified medical language system data availability the source code underlying this article is available on github [ 25 ]."

"conclusions the resulting lexicon and rule-based fh system are freely available through the open health natural language processing github electronic health record natural language processing family history sublanguage analysis rule-based system deep learning family history (fh) has long been regarded as a core element in caring for patients who have varied health concerns [ ] with the capability to significantly enhance the delivery of precision medicine [ ].; we implemented this as an ohnlp toolkit module with code available on github [ ].; abbreviations bert bidirectional encoder representations from transformers cui concept unique identifier ehr electronic health record fair findable accessible interoperable and reusable fh family history fhir fast healthcare interoperability resource fm family member fn false negative n2c2 2019 nlp clinical challenge nlp natural language processing ohnlp open health natural language processing pure princeton university relation extraction rite reproducible implementable transparent and explainable sfcp standardization framework for clinical problems snomed-ct systematized nomenclature of medicine clinical terms tp true positive umls unified medical language system data availability the source code underlying this article is available on github [ 25 ]."

"Conflicts of Interest: None declared."

"This work was made possible by National Institutes of Health (NIH) grants (1U01TR002062-01, U24CA194215-01A1, and R01LM013240)."