The mutational landscape of a US Midwestern breast cancer cohort reveals subtype-specific cancer drivers and prognostic markers.

Authors:
Vellichirammal NN; Tan YD; Xiao P; Eudy J; Shats O and 4 more

Journal:
Hum Genomics

Publication Year: 2023

DOI:
10.1186/s40246-023-00511-6

PMCID:
PMC10349437

PMID:
37454130

Journal Information

Full Title: Hum Genomics

Abbreviation: Hum Genomics

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Evidence found in paper:

"whole-exome sequencing fastq files are uploaded in the ncbi sra database with bioproject accession number: prjna824495."

Code Sharing
Evidence found in paper:

"Declarations Ethics approval and consent to participateThis study was approved by the Institutional Review Board (IRB) of the University of Nebraska Medical Center (0155-13-EP, and the IRB for the data collection (iCaRe2) is 253-13-EP). Patients gave their informed written consent to participate in this study. Consent for publicationNot applicable. Competing of interestsThe authors have no conflicts of interest to declare. Competing of interests The authors have no conflicts of interest to declare."

Evidence found in paper:

"Funding Whole-exome sequencing was funded by a grant from the Helmsley Charitable Trust Foundation. BSBC receives support from the Nebraska Research Initiative (NRI) and NIH awards (5P30CA036727, 2P20GM103427, 2U54GM115458)."

Protocol Registration
Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025