Going beyond consensus genome sequences: An innovative SNP-based methodology reconstructs different Ugandan cassava brown streak virus haplotypes at a nationwide scale in Rwanda.

"data availability the datasets of genome sequences generated and analyzed during this study are available in the genbank repository under the following accession numbers: ok423771; ok423772; ok423773; ok423774; ok423775; ok423776; ok423777; ok423778; ok423779; ok423780; ok423781; ok423782; ol579727; ol579728; ol579729; and ol57973.; in addition raw data were deposited in sra (prjna768633) and can be found at https://www ncbi nlm nih gov/sra/prjna768633 . data availability the datasets of genome sequences generated and analyzed during this study are available in the genbank repository under the following accession numbers: ok423771"

"Conflict of interest: The authors declare no conflict of interest."

"Funding The study was carried out thanks to the support of 1. ARES (Académie de Recherche et d’Enseignement Supérieur, Fédération Wallonie-Bruxelles, Belgium)-funded project iCARE (Improved Cassava Virus Resistance mitigation strategies and development of a disease-free seed system), and (2) Inextvir project from European’a Horizon 2020 Research and Innovation program (Grant n°813542)."