Selection of cross-reactive T cells by commensal and food-derived yeasts drives cytotoxic T_H1 cell responses in Crohn's disease.

"data availability raw paired-end scrna-seq fastq files from both gene expression and tcr libraries as well as processed gene expression and tcr data as feature-barcode matrix files and clonotype tables respectively have been deposited at the gene expression omnibus (accession no gse227638 ) and github under https://github com/agbacher/fungi . data availability raw paired-end scrna-seq fastq files from both gene expression and tcr libraries as well as processed gene expression and tcr data as feature-barcode matrix files and clonotype tables respectively have been deposited at the gene expression omnibus (accession no gse227638 ) and github under https://github com/agbacher/fungi ."

"data availability raw paired-end scrna-seq fastq files from both gene expression and tcr libraries as well as processed gene expression and tcr data as feature-barcode matrix files and clonotype tables respectively have been deposited at the gene expression omnibus (accession no gse227638 ) and github under https://github com/agbacher/fungi .; code availability all code is deposited in github under https://github com/agbacher/fungi ."

"Competing interests Since January 2023, E.R. has been an employee of GlaxoSmithKline. The remaining authors declare no competing interests."

"Funding Open access funding provided by Christian-Albrechts-Universität zu Kiel."