PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets.

Publication Year: 2023

DOI:
10.1093/molbev/msad234

PMCID:
PMC10655845

PMID:
37879113

Journal Information

Full Title: Mol Biol Evol

Abbreviation: Mol Biol Evol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Molecular Biology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Evidence found in paper:

"data availability the documented code of phylter is available at https://github com/damiendevienne/phylter along with thorough documentation.; all data and scripts used in this study are available on the dedicated github repository available at https://github com/damiendevienne/phylter-data/ ."

Evidence found in paper:

"data availability the documented code of phylter is available at https://github com/damiendevienne/phylter along with thorough documentation.; all data and scripts used in this study are available on the dedicated github repository available at https://github com/damiendevienne/phylter-data/ .; software availability phylter is a package written in r language ( r core team 2023 ) available on cran ( https://cran r-project org/web/packages/phylter/index html ) for the latest stable version and on github ( https://github com/damiendevienne/phylter ) for the latest development version."

Evidence found in paper:

"Conflict of interest statement. None declared."

Evidence found in paper:

"Work was funded by ANR Grant 18-CE02-0007 (Sthoriz) to DMDV, ANR Grant 19-CE45-0010 (Evoluthon) to ET, and European Research Council grant ERC-2015-CoG-683257 (ConvergeAnt project) to FD. This is contribution ISEM 2023-255 of the Institut des Sciences de l’Evolution de Montpellier. We thank Mélodie Bastian for help with the simulations and two anonymous reviewers for helpful comments."

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Open Access
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Last Updated: Aug 05, 2025