Role of affinity in plasma cell development in the germinal center light zone.

Authors:
ElTanbouly MA; Ramos V; MacLean AJ; Chen ST; Loewe M and 7 more

Journal:
J Exp Med

Publication Year: 2023

DOI:
10.1084/jem.20231838

PMCID:
PMC10631489

PMID:
37938344

Journal Information

Full Title: J Exp Med

Abbreviation: J Exp Med

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Allergy and Immunology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Core Indicators
Evidence found in paper:

"the computer code to process the antibody sequences is available on github ( https://github com/stratust/igpipeline/tree/igpipeline2_timepoint_v2 ) scrna-seq (smartseq2) data from this study ( fig 4 and fig 5 ) are available at the gene expression omnibus under accession no gse246382 . the raw sequencing data and computer scripts associated with fig 1 and fig 5 have been deposited at github ( https://github com/stratust/igpipeline/tree/igpipeline2_timepoint_v2 ).; the computer code to process the antibody sequences is available on github ( https://github com/stratust/igpipeline/tree/igpipeline2_timepoint_v2 ) scrna-seq (smartseq2) data from this study ( fig 4 and fig 5 ) are available at the gene expression omnibus under accession no gse246382 ."

Evidence found in paper:

"heavy and light chains derived from the same cell were subsequently paired and clonotypes were assigned using the publicly available pipeline at github ( https://github com/stratust/igpipeline/tree/igpipeline2_timepoint_v2 ).; the raw sequencing data and computer scripts associated with fig 1 and fig 5 have been deposited at github ( https://github com/stratust/igpipeline/tree/igpipeline2_timepoint_v2 ).; the computer code to process the antibody sequences is available on github ( https://github com/stratust/igpipeline/tree/igpipeline2_timepoint_v2 ) scrna-seq (smartseq2) data from this study ( fig 4 and fig 5 ) are available at the gene expression omnibus under accession no gse246382 ."

Evidence found in paper:

"Disclosures: The authors declare no competing interests exist."

Evidence found in paper:

"This work was supported by the National Institutes of Health (NIH) (1P01AI138212, P01AI100148, and 5R37 AI037526), NIH Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (1UM1AI144462-01), MC Bulgari 2023, and the Stavros Niarchos Foundation to M.C. Nussenzweig. M.C. Nussenzweig is a Howard Hughes Medical Institute investigator."

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Open Access
Paper is freely available to read
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Tool: rtransparent

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Last Updated: Aug 05, 2025