Inferring Viral Transmission Time from Phylogenies for Known Transmission Pairs.

Authors:
Goldberg EE; Lundgren EJ; Romero-Severson EO; Leitner T.

Journal:
Mol Biol Evol

Publication Year: 2024

DOI:
10.1093/molbev/msad282

PMCID:
PMC10776241

PMID:
38149995

View on PubMed View on PMC View Publisher
Journal Information

Full Title: Mol Biol Evol

Abbreviation: Mol Biol Evol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Molecular Biology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

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Transparency Score
4/6
66.7% Transparent
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Evidence found in paper:

"code for fitting our model is provided at https://github com/molevolepid/timeslice .; the coalescent simulation code is available at https://github com/molevolepid/biophybreak .; code implementing the markov time-slice model is available at https://github com/molevolepid/timeslice ."

Evidence found in paper:

"Conflict of interest statement. None declared."

Evidence found in paper:

"Funding This work was supported by National Institutes of Health grant R01AI087520 to T.L. We benefitted from R. Heil’s coding efforts on a related project, supported by a summer student fellowship from LANL’s Center for Nonlinear Studies."

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Paper is freely available to read
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Tool: rtransparent

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Last Updated: Aug 05, 2025