Incorporating metabolic activity, taxonomy and community structure to improve microbiome-based predictive models for host phenotype prediction.

Publication Year: 2024

DOI:
10.1080/19490976.2024.2302076

PMCID:
PMC10793686

PMID:
38214657

Journal Information

Full Title: Gut Microbes

Abbreviation: Gut Microbes

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Gastroenterology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Evidence found in paper:

"the list of datasets and their abundance profiles are available in the microkpnn github repository (see implementation below).; data availability statement microkpnn is available as an open source repository at https://github com/mgtools/microkpnn . data availability statement microkpnn is available as an open source repository at https://github com/mgtools/microkpnn . supplementary material supplemental data for this article can be accessed online at https://doi"

Evidence found in paper:

"microkpnn is publicly available at https://github com/mgtools/microkpnn .; the list of datasets and their abundance profiles are available in the microkpnn github repository (see implementation below).; for clarity we called our adopted version of kpnn for microbiome-based prediction as microkpnn which is available as a github repository at https://github com/mgtools/microkpnn .; data availability statement microkpnn is available as an open source repository at https://github com/mgtools/microkpnn ."

Evidence found in paper:

"Disclosure statement No potential conflict of interest was reported by the author(s)."

Funding Disclosure
Protocol Registration
Open Access
Paper is freely available to read
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Replication
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Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025