Choclo virus (CHOV) recovered from deep metatranscriptomics of archived frozen tissues in natural history biorepositories.

Journal Information

Full Title: PLoS Negl Trop Dis

Abbreviation: PLoS Negl Trop Dis

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Tropical Medicine

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
Transparency Indicators
Click on green indicators to view evidence text
Core Indicators
Evidence found in paper:

"reads were deposited in ncbi short read archive (sra) under bioproject prjna1015235.; host mitochondrial cytochrome b sequence was deposited under genbank accession or365535.; the recovered choclo virus assembly was deposited in ncbi genbank under accessions or365536 or365537 or365538.; reads were deposited in ncbi short read archive (sra) under bioproject prjna1015235.; host mitochondrial cytochrome b sequence was deposited under genbank accession or365535.; the recovered choclo virus assembly was deposited in ncbi genbank under accessions or365536 or365537 or365538.; reads were submitted to the ncbi short read archive (sra) under bioproject prjna1015235.; the resulting assembly for each segment was deposited in ncbi genbank under accessions or365536 or365537 or365538 and linked to the voucher specimen as best practice [ ]. s1 table (xlsx data availability all sequence data generated in this study were submitted to public archives. reads were deposited in ncbi short read archive (sra) under bioproject prjna1015235"

Code Sharing
Evidence found in paper:

"The authors have declared that no competing interests exist."

Evidence found in paper:

"This work has been partially supported by the National Science Foundation PIPP Phase I grant (NSF 2155222 to JAC). Continued clinical and animal surveillance in Panama has been supported by an Opportunity Pool Award supplemented by the International Centers for Infectious Diseases Research Program of the National Institutes of Health (U19-AI 45452); funds from the Gorgas Memorial Institute for Health Studies, Hantavirus Research Project (04-90-0075-8 to BA); funds from the Secretaria Nacional de Ciencia y Tecnologia (Innovation and Technology Program ftd06-089 to BA); funds from the Ministry of Economy and Finance of Panama (FPI-MEF-056, 111130150.501.274, and PHoEZyTV I-II to BA). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025