The haplotype-resolved telomere-to-telomere carnation (<i>Dianthus caryophyllus</i>) genome reveals the correlation between genome architecture and gene expression.

"Conflict of interest The authors declare that they have no competing interests."

"This work was funded by the National Natural Science Foundation of China (32002074); the Shenzhen Fundamental Research Program (JCYJ20220818103212025); Major Scientific Research Tasks, Kunpeng Institute of Modern Agriculture at Foshan (KIMA-ZDKY2022004); the Scientific Research Foundation for the Principal Investigator, Kunpeng Institute of Modern Agriculture at Foshan (KIMA-QD2022004); and the Chinese Academy of Agricultural Sciences Elite Youth Program (110243160001007) to Z.W. This work was also supported by the Innovation Program of Chinese Academy of Agricultural Sciences, Science Technology and Innovation Commission of Shenzhen Municipality of China (ZDSYS20200811142605017)."