Chromosome-Level Assembly of Artemia franciscana Sheds Light on Sex Chromosome Differentiation.

Publication Year: 2024

DOI:
10.1093/gbe/evae006

PMCID:
PMC10827361

PMID:
38245839

Journal Information

Full Title: Genome Biol Evol

Abbreviation: Genome Biol Evol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Molecular Biology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Core Indicators
Evidence found in paper:

"the raw data are available on the national center for biotechnology information (ncbi) short-read archive (bioproject number prjna1017357). data availability the assembly pipeline and the scripts used in the analysis can be accessed on the gitpage ( https://github com/melkrewi/artemia_franciscana_genome/ )."

Evidence found in paper:

"data availability the assembly pipeline and the scripts used in the analysis can be accessed on the gitpage ( https://github com/melkrewi/artemia_franciscana_genome/ ). we then mapped the 2 resulting assemblies to the input assembly with minimap2 ( ) and used a python script to identify the merges that are supported by both approaches ( supplementary fig s3 supplementary material online)."

COI Disclosure
Evidence found in paper:

"Data Availability: The assembly pipeline and the scripts used in the analysis can be accessed on the gitpage (https://github.com/Melkrewi/Artemia_franciscana_genome/). The raw data are available on the National Center for Biotechnology Information (NCBI) short-read archive (BioProject number PRJNA1017357). The final assembly, the annotation, and the supplementary data sets are available on (https://doi.org/10.15479/AT:ISTA:14705). All genomic and transcriptomic samples used for this study and the steps of the analysis they were used in are described in supplementary table S3, Supplementary Material online."

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Open Access
Paper is freely available to read
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Last Updated: Aug 05, 2025