Encyclopedia of Family A DNA Polymerases Localized in Organelles: Evolutionary Contribution of Bacteria Including the Proto-Mitochondrion.

Authors:
Harada R; Hirakawa Y; Yabuki A; Kim E; Yazaki E and 4 more

Journal:
Mol Biol Evol

Publication Year: 2024

DOI:
10.1093/molbev/msae014

PMCID:
PMC10877234

PMID:
38271287

Journal Information

Full Title: Mol Biol Evol

Abbreviation: Mol Biol Evol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Molecular Biology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

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Evidence found in paper:

"the transcriptome data of t globose nies-1390 and f tropica srt902 were deposited in genbank/embl/ddbj sequence read archive under accession no prjna932580. additional databases were then searched with blastp or tblastn ( ) to identify additional members of the putative new types including the resources provided by genbank ( ) joint genome institute (jgi) genome portal ( https://genome jgi doe gov/portal/ ) the marine microbial eukaryote transcriptome sequencing project (mmetsp) ( ) and onekp transcriptome sequencing projects ( ) and individual sequence datasets deposited in dryad as supplemental data to publications reporting on the generation of genome or transcriptome assemblies (further details on the sequence sources are provided in supplementary table s1 supplementary material online).; data availability all the alignments treefiles inferred from the alignments and the fasta files containing transcriptome assemblies generated in this study are available at https://doi org/10 5061/dryad b5mkkwhjz . data availability all the alignments treefiles inferred from the alignments and the fasta files containing transcriptome assemblies generated in this study are available at https://doi"

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Evidence found in paper:

"Funding The work was supported by the Japan Society for Promotion of Sciences projects 18KK0203, 19H03280, 23H02535, and BPI05044 (to Y.I.), 22J11104 (to R.H.), 19H03274 (to R.K.), and the Czech Science Foundation Grant No. 21-19664S (to M.E.). T. globosa (NIES-1390) and S. cerevisiae BY4742 strain were provided by the National Institute for Environmental Studies, Tsukuba, Japan (NIES), and Yeast Genetic Research Center (YGRC) through the National Bio-Resource Project (NBRP) of the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan, respectively. Computations were partially performed on the NIG supercomputer at ROIS National Institute of Genetics. The phylogenetic analyses conducted in this work have been carried out partially under the “Interdisciplinary Computational Science Program” in the Center for Computational Sciences, University of Tsukuba."

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Last Updated: Aug 05, 2025