Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays.

Journal Information

Full Title: G3 (Bethesda)

Abbreviation: G3 (Bethesda)

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Molecular Biology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Core Indicators
Evidence found in paper:

"data availability pacbio hifi reads and genome assembly described in this work are available at ncbi under the bioproject number prjna987151 and biosample accession samn35889979.; the whole genome shotgun project has been deposited at ddbj/ena/genbank under the accession jaudjh000000000 . the blobtools contamination check output and braker2 annotation are available on dryad ( https://datadryad org/stash/share/abzgdw3kq56uteqny_tbqhyyc8hvf5-uvetbg028mdu ). data availability pacbio hifi reads and genome assembly described in this work are available at ncbi under the bioproject number prjna987151"

Evidence found in paper:

"we limited the minimum alignment length displayed in the synteny plot to 300 bp using the delta-filter utility in mumer (-l 300) and plotted synteny using a custom r script available from .; the code used in this study is available at https://github com/chelskoj/aio/blob/main/automeris_assembly_annotation supplemental material available at g3 online. the code used in this study is available at https://github com/chelskoj/aio/blob/main/automeris_assembly_annotation supplemental material available at g3 online."

Evidence found in paper:

"Conflicts of interest The author(s) declare no conflicts of interest."

Evidence found in paper:

"Funding This study was supported by the National Science Foundation (NSF) Graduate Research Fellowship grant #00130513 to CS and in part by NSF EF No. #2217159."

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Last Updated: Aug 05, 2025