COSMIC-based mutation database enhances identification efficiency of HLA-I immunopeptidome.

Authors:
Wang F; Zhang Z; Mao M; Yang Y; Xu P and 1 more

Journal:
J Transl Med

Publication Year: 2024

DOI:
10.1186/s12967-023-04821-0

PMCID:
PMC10858511

PMID:
38336780

Journal Information

Full Title: J Transl Med

Abbreviation: J Transl Med

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Medicine

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Core Indicators
Evidence found in paper:

"availability of data and materials the raw ms-based sequencing files of hepg2 hla-i immunopeptidome have been deposited to iprox integrated proteome resources with identifier ipx0007010000 proteomexchange identifier pxd045203."

Code Sharing
Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationThe corresponding author has received consent for publication. Competing interestsThe authors declare no potential conflicts of interest. Competing interests The authors declare no potential conflicts of interest."

Evidence found in paper:

"Funding This work was funded by the MOST (2022YFA1304600 and 2020YFE0202200), the National Natural Science Foundation of China (NSFC) (32141003, 32101190, 32070668 and 32071431); the CAMS Innovation Fund for Medical Sciences (2019-I2M-5–017 and 2022-I2M-C&T-B-082), the Foundation of State Key Lab of Proteomics (SKLP-K201704, SKLP-C202002 and SKLP-K201901); and the Mass Spectrometry Platform Open Project of National Center for Protein Sciences Beijing (2021-NCPSB-001)."

Protocol Registration
Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025