Molecular characterization of recombinant LSDV isolates from 2022 outbreak in Indonesia through phylogenetic networks and whole-genome SNP-based analysis.

Authors:
Sendow I; Meki IK; Dharmayanti NLPI; Hoerudin H; Ratnawati A and 10 more

Journal:
BMC Genomics

Publication Year: 2024

DOI:
10.1186/s12864-024-10169-6

PMCID:
PMC10913250

PMID:
38438878

Journal Information

Journal Title: BMC Genomics

Detailed journal information not available.

Publication Details

Subject Category: Genetics & Heredity

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Evidence found in paper:

"for five samples the targeted fragments were successfully amplified and sequenced and the assembled contigs of 606 1146 327 and 832 bp for the rpo30 gpcr eev and b22r genes respectively were deposited in the genbank with accession numbers or246967 to or246986.; the whole genome sequences of indonesia lsdv isolates lsdv_indonesia_2022_s1 and lsdv_indonesia_2022_s4 were deposited in the genbank database under the accession numbers or232413 and or232414 respectively.; the dna sequences generated and used in the analysis for this study are available in the gen-bank under the accession numbers or246967 to or246986 for gene fragments and or232413 and or232414 for the whole genomes."

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Evidence found in paper:

"Declarations Ethical approval and consent to participateThe authors confirm that the ethical policies of the journal, as stated on the journal’s ethical guidelines have been adhered to. The samples used in this study were collected in animal farms after approval by all owners and submitted to the Research Centre for Veterinary Science, National Research and Innovation Agency, in Indonesia for LSDV diagnosis. Ethical approval was not required. This study was conducted in accordance with ARRIVE guidelines. Consent for publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding This research was supported by the VETLAB network initiative of the Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, funded through the Peaceful Uses Initiatives (PUI) by Japan and the United States of America."

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Open Access
Paper is freely available to read
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Last Updated: Aug 05, 2025