Joint analysis of mutational and transcriptional landscapes in human cancer reveals key perturbations during cancer evolution.

Authors:
Cho JW; Cao J; Hemberg M.

Journal:
Genome Biol

Publication Year: 2024

DOI:
10.1186/s13059-024-03201-1

PMCID:
PMC10921788

PMID:
38459554

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Journal Information

Journal Title: Genome Biol

Detailed journal information not available.

Publication Details

Subject Category: Genetics & Heredity

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score

5/6

83.3% Transparent

Transparency Indicators

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Core Indicators

Data Sharing

Evidence found in paper:

"availability of data and materials code availability: canvolution was developed in r and it is available at ( https://github com/jaewon-cho/canvolution/tree/master ) [ 86 ]. data availability: the lung cancer dataset was obtained from an ncbi bioproject #prjna591860"

Code Sharing

Evidence found in paper:

"availability of data and materials code availability: canvolution was developed in r and it is available at ( https://github com/jaewon-cho/canvolution/tree/master ) [ 86 ]."

COI Disclosure

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Funding Disclosure

Evidence found in paper:

"Funding This work was funded by the Evergrande Center and the Helmsley Foundation (2008–04050)."

Protocol Registration

Open Access

Paper is freely available to read

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Replication

Novelty Statement

Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025