Research Papers

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Performance of Topology Tests under Extreme Selection Bias.
Markowski E; Susko E.
Mol Biol Evol (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
A Conserved Ribosomal Protein Has Entirely Dissimilar Structures in Different Organisms.
Schierholz L; Brown CR; Helena-Bueno K; Uversky VN; Hirt RP; Barandun J; Melnikov SV.
Mol Biol Evol (Unknown)
Published: 2024
3/6 Transparent
Data Funding Declared
Ursa: A Comprehensive Multiomics Toolbox for High-Throughput Single-Cell Analysis.
Pan L; Mou T; Huang Y; Hong W; Yu M; Li X.
Mol Biol Evol (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Mapping and Functional Dissection of the Rumpless Trait in Piao Chicken Identifies a Causal Loss of Function Mutation i…
Guo Y; Tian J; Song C; Han W; Zhu C; Li H; Zhang S; Chen K; Li N; Carlborg Ö; Hu X.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Data Funding Declared
Phylloxera and Aphids Show Distinct Features of Genome Evolution Despite Similar Reproductive Modes.
Li Z; Xue AZ; Maeda GP; Li Y; Nabity PD; Moran NA.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Data Funding Declared
Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae…
Liang H; Mower JP; Chia CP.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Interchromosomal Colocalization with Parental Genes Is Linked to the Function and Evolution of Mammalian Retrocopies.
Yan Y; Tian Y; Wu Z; Zhang K; Yang R.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Code Funding Declared
An Ancestral Major Histocompatibility Complex Organization in Cartilaginous Fish: Reconstructing MHC Origin and Evoluti…
Veríssimo A; Castro LFC; Muñoz-Mérida A; Almeida T; Gaigher A; Neves F; Flajnik MF; Ohta Y.
Mol Biol Evol (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Molluscan Genomes Reveal Extensive Differences in Photopigment Evolution Across the Phylum.
McElroy KE; Audino JA; Serb JM.
Mol Biol Evol (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Subgenomic Stability of Progenitor Genomes During Repeated Allotetraploid Origins of the Same Grass Brachypodium hybrid…
Mu W; Li K; Yang Y; Breiman A; Yang J; Wu Y; Zhu M; Wang S; Catalan P; Nevo E; Liu J.
Mol Biol Evol (Unknown)
Published: 2023
4/6 Transparent
Code Funding Declared
IPOP: An Integrative Plant Multi-omics Platform for Cross-species Comparison and Evolutionary Study.
Huang W; Hu X; Ren Y; Song M; Ma C; Miao Z.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
DegronMD: Leveraging Evolutionary and Structural Features for Deciphering Protein-Targeted Degradation, Mutations, and …
Xu H; Hu R; Zhao Z.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon…
Hehenberger E; Guo J; Wilken S; Hoadley K; Sudek L; Poirier C; Dannebaum R; Susko E; Worden AZ.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Data Funding Declared
Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation.
Jensen A; Swift F; de Vries D; Beck RMD; Kuderna LFK; Knauf S; Chuma IS; Keyyu JD; Kitchener AC; Farh K; Rogers J; Marques-Bonet T; Detwiler KM; Roos C; Guschanski K.
Mol Biol Evol (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Shrinkage-based Random Local Clocks with Scalable Inference.
Fisher AA; Ji X; Nishimura A; Baele G; Lemey P; Suchard MA.
Mol Biol Evol (Unknown)
Published: 2023
4/6 Transparent
Data Code Funding Declared
Building Phylogenetic Trees From Genome Sequences With kSNP4.
Hall BG; Nisbet J.
Mol Biol Evol (Unknown)
Published: 2023
1/6 Transparent
Evolution of the Spider Homeobox Gene Repertoire by Tandem and Whole Genome Duplication.
Aase-Remedios ME; Janssen R; Leite DJ; Sumner-Rooney L; McGregor AP.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Code Funding Declared
Mitonuclear Sex Determination? Empirical Evidence from Bivalves.
Smith CH; Mejia-Trujillo R; Breton S; Pinto BJ; Kirkpatrick M; Havird JC.
Mol Biol Evol (Unknown)
Published: 2023
4/6 Transparent
Data Code Funding Declared
Opsin Gene Duplication in Lepidoptera: Retrotransposition, Sex Linkage, and Gene Expression.
Mulhair PO; Crowley L; Boyes DH; Lewis OT; Holland PWH.
Mol Biol Evol (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Deleterious and Adaptive Mutations in Plant Germplasm Conserved Ex Situ.
Fu YB; Peterson GW; Horbach C.
Mol Biol Evol (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Evolutionary "Crowdsourcing": Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Tra…
Kosterlitz O; Grassi N; Werner B; McGee RS; Top EM; Kerr B.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Natural Selection Signatures in the Hondo and Ryukyu Japanese Subpopulations.
Liu X; Matsunami M; Horikoshi M; Ito S; Ishikawa Y; Suzuki K; Momozawa Y; Niida S; Kimura R; Ozaki K; Maeda S; Imamura M; Terao C.
Mol Biol Evol (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets.
Comte A; Tricou T; Tannier E; Joseph J; Siberchicot A; Penel S; Allio R; Delsuc F; Dray S; de Vienne DM.
Mol Biol Evol (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Evolutionary Insights from a Large-Scale Survey of Population-Genomic Variation.
Ye Z; Wei W; Pfrender ME; Lynch M.
Mol Biol Evol (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture P…
Li J; Han G; Tian X; Liang D; Zhang P.
Mol Biol Evol (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared