Research Papers

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What matters most? Assessment of within-canopy factors influencing the needle microbiome of the model conifer, Pinus ra…
Addison S; Armstrong C; Wigley K; Hartley R; Wakelin S.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Role in aromatic metabolites biodegradation and adverse implication of denitrifying microbiota in kitchen waste compost…
Shi M; Song C; Xie L; Zhang G; Wei Z.
Environ Microbiome (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Crop rotation significantly influences the composition of soil, rhizosphere, and root microbiota in canola (Brassica na…
Town JR; Dumonceaux T; Tidemann B; Helgason BL.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach.
Huang Y; Li L; Yin X; Zhang T.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Code Funding Declared
The gut microbiome of solitary bees is mainly affected by pathogen assemblage and partially by land use.
Fernandez De Landa G; Alberoni D; Baffoni L; Fernandez De Landa M; Revainera PD; Porrini LP; Brasesco C; Quintana S; Zumpano F; Eguaras MJ; Maggi MD; Di Gioia D.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Metapangenomics of wild and cultivated banana microbiome reveals a plethora of host-associated protective functions.
Singh S; Aghdam SA; Lahowetz RM; Brown AMV.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Dark-zone alterations expand throughout Paleolithic Lascaux Cave despite spatial heterogeneity of the cave microbiome.
Bontemps Z; Prigent-Combaret C; Guillmot A; Hugoni M; Moënne-Loccoz Y.
Environ Microbiome (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Belowground microbiota analysis indicates that Fusarium spp. exacerbate grapevine trunk disease.
Li Y; Li X; Zhang W; Zhang J; Wang H; Peng J; Wang X; Yan J.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Testing the stress gradient hypothesis in soil bacterial communities associated with vegetation belts in the Andean Ata…
Mandakovic D; Aguado-Norese C; García-Jiménez B; Hodar C; Maldonado JE; Gaete A; Latorre M; Wilkinson MD; Gutiérrez RA; Cavieres LA; Medina J; Cambiazo V; Gonzalez M.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Effects of Mineral on Taxonomic and Functional Structures of Microbial Community in Tengchong Hot Springs via in-situ c…
Li F; Hou W; Wang S; Zhang Y; He Q; Zhang W; Dong H.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Potato root-associated microbiomes adapt to combined water and nutrient limitation and have a plant genotype-specific r…
Faist H; Trognitz F; Antonielli L; Symanczik S; White PJ; Sessitsch A.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Composition and variability of core phyllosphere fungal mycobiota on field-grown broccoli.
Kim MS; Park EJ.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Metagenomics and metabarcoding experimental choices and their impact on microbial community characterization in freshwa…
Rieder J; Kapopoulou A; Bank C; Adrian-Kalchhauser I.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Leveraging microbiome rediversification for the ecological rescue of soil function.
King WL; Richards SC; Kaminsky LM; Bradley BA; Kaye JP; Bell TH.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Out of the blue: the independent activity of sulfur-oxidizers and diatoms mediate the sudden color shift of a tropical …
Arce-Rodríguez A; Libby E; Castellón E; Avendaño R; Cambronero JC; Vargas M; Pieper DH; Bertilsson S; Chavarría M; Puente-Sánchez F.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Phylogenomics of five Pseudanabaena cyanophages and evolutionary traces of horizontal gene transfer.
Zhu J; Yang F; Du K; Wei ZL; Wu QF; Chen Y; Li WF; Li Q; Zhou CZ.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Beehives possess their own distinct microbiomes.
Santorelli LA; Wilkinson T; Abdulmalik R; Rai Y; Creevey CJ; Huws S; Gutierrez-Merino J.
Environ Microbiome (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Temporary establishment of bacteria from indoor plant leaves and soil on human skin.
Mhuireach GÁ; Fahimipour AK; Vandegrift R; Muscarella ME; Hickey R; Bateman AC; Van Den Wymelenberg KG; Bohannan BJM.
Environ Microbiome (Unknown)
Published: 2022
4/6 Transparent
Data Funding Declared
Legacy effects of fumigation on soil bacterial and fungal communities and their response to metam sodium application.
Li X; Skillman V; Dung J; Frost K.
Environ Microbiome (Unknown)
Published: 2022
5/6 Transparent
Data Code Funding Declared
Expanding known viral diversity in plants: virome of 161 species alongside an ancient canal.
Yang S; Mao Q; Wang Y; He J; Yang J; Chen X; Xiao Y; He Y; Zhao M; Lu J; Yang Z; Dai Z; Liu Q; Yao Y; Lu X; Li H; Zhou R; Zeng J; Li W; Zhou C; Wang X; Shen Q; Xu H; Deng X; Delwart E; Shan T; Zhang W.
Environ Microbiome (Unknown)
Published: 2022
4/6 Transparent
Data Funding Declared
MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.
Nata'ala MK; Avila Santos AP; Coelho Kasmanas J; Bartholomäus A; Saraiva JP; Godinho Silva S; Keller-Costa T; Costa R; Gomes NCM; Ponce de Leon Ferreira de Carvalho AC; Stadler PF; Sipoli Sanches D; Nunes da Rocha U.
Environ Microbiome (Unknown)
Published: 2022
5/6 Transparent
Data Code Funding Declared
Alternative approaches to identify core bacteria in Fucus distichus microbiome and assess their distribution and host-s…
Park J; Davis K; Lajoie G; Parfrey LW.
Environ Microbiome (Unknown)
Published: 2022
5/6 Transparent
Data Code Funding Declared
Australian native Glycine clandestina seed microbiota hosts a more diverse bacterial community than the domesticated so…
Chandel A; Mann R; Kaur J; Tannenbaum I; Norton S; Edwards J; Spangenberg G; Sawbridge T.
Environ Microbiome (Unknown)
Published: 2022
4/6 Transparent
Data Funding Declared
A comprehensive assessment of fungal communities in various habitats from an ice-free area of maritime Antarctica: dive…
Zhang T; Yan D; Ji Z; Chen X; Yu L.
Environ Microbiome (Unknown)
Published: 2022
4/6 Transparent
Data Funding Declared
Frequency of occurrence and habitat selection shape the spatial variation in the antibiotic resistome in riverine ecosy…
Jiang C; Chen H; Grossart HP; Zhang Q; Stoks R; Zhao Y; Ju F; Liu W; Yang Y.
Environ Microbiome (Unknown)
Published: 2022
4/6 Transparent
Data Funding Declared