Research Papers

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Phenotypic and genomic characterization of <i>Pseudomonas aeruginosa</i> isolates recovered from catheter-associated ur…
Eladawy M; Thomas JC; Hoyles L.
Microb Genom (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Evidence of potential <i>Campylobacter jejuni</i> zooanthroponosis in captive macaque populations.
Zang X; Pascoe B; Mourkas E; Kong K; Jiao X; Sheppard SK; Huang J.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Genetic variants linked to the phenotypic outcome of invasive disease and carriage of <i>Neisseria meningitidis</i>.
Eriksson L; Johannesen TB; Stenmark B; Jacobsson S; Säll O; Hedberg ST; Fredlund H; Stegger M; Mölling P.
Microb Genom (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Continuing genomic evolution of the <i>Neisseria meningitidis</i> cc11.2 urethritis clade, <i>Nm</i>UC: a narrative rev…
Rodriguez EI; Tzeng YL; Stephens DS.
Microb Genom (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Molecular basis of the phenotypic variants arising from a <i>Pseudoalteromonas lipolytica</i> mutator.
Zeng Z; Gu J; Lin S; Li Q; Wang W; Guo Y.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Optimization of high-throughput 16S rRNA gene amplicon sequencing: an assessment of PCR pooling, mastermix use and cont…
Aggarwal D; Rajan D; Bellis KL; Betteridge E; Brennan J; de Sousa C; Carriage Study Team; Parkhill J; Peacock SJ; de Goffau MC; Wagner J; Harrison EM.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
The advantage of intergenic regions as genomic features for machine-learning-based host attribution of <i>Salmonella</i…
Chalka A; Dallman TJ; Vohra P; Stevens MP; Gally DL.
Microb Genom (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Acquisition of Type I methyltransferase via horizontal gene transfer increases the drug resistance of <i>Aeromonas vero…
Ma J; Zhao H; Mo S; Li J; Ma X; Tang Y; Li H; Liu Z.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Genomic and phenotypic characterization of <i>Salmonella enterica</i> serovar Kentucky.
Richards AK; Kue S; Norris CG; Shariat NW.
Microb Genom (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Genomic characterization of cocirculating <i>Corynebacterium diphtheriae</i> and non-diphtheritic <i>Corynebacterium</i…
Xiaoli L; Peng Y; Williams MM; Lawrence M; Cassiday PK; Aneke JS; Pawloski LC; Shil SR; Rashid MO; Bhowmik P; Weil LM; Acosta AM; Shirin T; Habib ZH; Tondella ML; Weigand MR.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Molecular characterization of <i>Streptococcus pneumoniae</i> causing disease among children in Nigeria during the intr…
Lo SW; Hawkins PA; Jibir B; Hassan-Hanga F; Gambo M; Olaosebikan R; Olanipekun G; Munir H; Kocmich N; Rezac-Elgohary A; Gambo S; Bagenda D; Fey P; Breiman RF; McGee L; Bentley SD; Obaro SK; Community Acquired Pneumonia and Invasive Bacterial Disease (CAPIBD) Consortium.
Microb Genom (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Complex evolutionary history of photosynthesis in <i>Bradyrhizobium</i>.
Avontuur JR; Wilken PM; Palmer M; Coetzee MPA; Stępkowski T; Venter SN; Steenkamp ET.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Analysis of <i>Escherichia coli</i> O157 strains in cattle and humans between Scotland and England & Wales: implication…
Chase-Topping M; Dallman TJ; Allison L; Lupolova N; Matthews L; Mitchell S; Banks CJ; Prentice J; Brown H; Tongue S; Henry M; Evans J; Gunn G; Hoyle D; McNeilly TN; Fitzgerald S; Smith-Palmer A; Shaaban S; Holmes A; Hanson M; Woolhouse M; Didelot X; Jenkins C; Gally DL.
Microb Genom (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
IS<i>1</i>-related large-scale deletion of chromosomal regions harbouring the oxygen-insensitive nitroreductase gene <i…
Wan Y; Sabnis A; Mumin Z; Potterill I; Jauneikaite E; Brown CS; Ellington MJ; Edwards A; Sriskandan S.
Microb Genom (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Clonal expansion and rapid characterization of <i>Klebsiella pneumoniae</i> ST1788, an otherwise uncommon strain spread…
Mentasti M; David S; Turton J; Morgan M; Turner L; Westlake J; Jenkins J; Williams C; Rey S; Watkins J; Daniel V; Mitchell S; Forbes G; Wootton M; Jones L.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Host interactions of novel <i>Crassvirales</i> species belonging to multiple families infecting bacterial host, <i>Bact…
Papudeshi B; Vega AA; Souza C; Giles SK; Mallawaarachchi V; Roach MJ; An M; Jacobson N; McNair K; Fernanda Mora M; Pastrana K; Boling L; Leigh C; Harker C; Plewa WS; Grigson SR; Bouras G; Decewicz P; Luque A; Droit L; Handley SA; Wang D; Segall AM; Dinsdale EA; Edwards RA.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
A discovery down under: decoding the draft genome sequence of <i>Pantoea stewartii</i> from Australia's Critically Enda…
White RT; Taylor W; Klukowski N; Vaughan-Higgins R; Williams E; Petrovski S; Rose JJA; Sarker S.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Genomic characterization of respiratory syncytial virus genotypes circulating in the paediatric population of Sydney, N…
Pangesti KNA; Ansari HR; Bayoumi A; Kesson AM; Hill-Cawthorne GA; Abd El Ghany M.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early…
Porter AF; Featherstone L; Lane CR; Sherry NL; Nolan ML; Lister D; Seemann T; Duchene S; Howden BP.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Code Funding Declared
Enhancing capacity for national genomics surveillance of antimicrobial resistance in public health laboratories in Keny…
Kigen C; Muraya A; Kyanya C; Kingwara L; Mmboyi O; Hamm T; Musila L.
Microb Genom (Unknown)
Published: 2023
5/6 Transparent
Data Code Funding Declared
Phenotypic and genotypic characterization of <i>Neisseria gonorrhoeae</i> isolates from Yaoundé, Cameroon, 2019 to 2020.
Tayimetha CY; Njunda LA; Akenji B; Founou RC; Feteh V; Zofou D; Chafa A; Oyono Y; Etogo B; Tseuko D; Fonkoua MC; Harrison OB.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Public health implementation of pathogen genomics: the role for accreditation and application of ISO standards.
Ballard SA; Sherry NL; Howden BP.
Microb Genom (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Feasibility and clinical utility of local rapid Nanopore influenza A virus whole genome sequencing for integrated outbr…
Williams TGS; Snell LB; Alder C; Charalampous T; Alcolea-Medina A; Sehmi JK; Al-Yaakoubi N; Humayun G; Miah S; Lackenby A; Zambon M; Batra R; Douthwaite S; Edgeworth JD; Nebbia G.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared
Corrigendum: 'Implementation of routine genomic surveillance provided insights into a locally acquired outbreak caused …
Rathnayake IU; Graham RMA; Bayliss J; Staples M; Micalizzi G; Ariotti L; Cover L; Heron B; Graham T; Stafford R; Rubenach S; D'Addona A; Jennison AV.
Microb Genom (Unknown)
Published: 2023
3/6 Transparent
Funding Declared
Corrigendum: 'A comparative genome analysis of the <i>Bacillota (Firmicutes</i>) class <i>Dehalobacteriia'</i>.
Song YC; Holland SI; Lee M; Chen G; Zaugg J; Löffler FE; Manefield MJ; Hugenholtz P; Kappler U.
Microb Genom (Unknown)
Published: 2023
3/6 Transparent
Funding Declared