Structural variants in the barley gene pool: precision and sensitivity to detect them using short-read sequencing and their association with gene expression and phenotypic variation.

"data availability raw dna sequencing data of the 23 barley inbreds have been deposited into the ncbi sequence read archive (sra) under the accession prjna77700. data of gene expression snp array adjusted entry means of phenotypes indels and sv clusters are available via figshare ( https://doi org/10 6084/m9 figshare 16802473 ).; snv data are available via zenodo ( https://doi org/10 5281/zenodo 6451025 ). data availability raw dna sequencing data of the 23 barley inbreds have been deposited into the ncbi sequence read archive (sra) under the accession prjna77700"

"snakemake workflows are available via github ( https://github com/mw-qggp/sv_barley )."

"Declarations Competing interestsThe authors declare that they have no competing interests. Ethics approval and consent to participateThe authors declare that the experimental research on plants described in this paper complied with institutional and national guidelines. Consent for publicationAll authors read and approved the final manuscript. Competing interests The authors declare that they have no competing interests."

"Funding Open Access funding enabled and organized by Projekt DEAL. This research was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy (EXC 2048/1, Project ID: 390686111). The funders had no influence on study design, the collection, analysis and interpretation of data, the writing of the manuscript, and the decision to submit the manuscript for publication."