ChromGene: gene-based modeling of epigenomic data.

Publication Year: 2023

DOI:
10.1186/s13059-023-03041-5

PMCID:
PMC10486095

PMID:
37679846

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
Transparency Indicators
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Core Indicators
Evidence found in paper:

"availability of data and materials the chromgene annotations generated in this study and the chromgene software are available under the mit license in the ernstlab chromgene github repository [ 30 ] and zenodo [ 31 ]. availability of data and materials the chromgene annotations generated in this study and the chromgene software are available under the mit license in the ernstlab chromgene github repository [ 30 ] and zenodo [ 31 ]. availability of data and materials the chromgene annotations generated in this study and the chromgene software are available under the mit license in the ernstlab chromgene github repository [ 30 ] and zenodo"

Evidence found in paper:

"availability of data and materials the chromgene annotations generated in this study and the chromgene software are available under the mit license in the ernstlab chromgene github repository [ 30 ] and zenodo [ 31 ]."

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsThe authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests."

Evidence found in paper:

"Funding This work was supported by the U.S. National Institutes of Health [grants T32HG002536 (A.J.), R01ES024995, U01HG007912, DP1DA044371, UG3NS104095, U01HG012079 (J.E.)], the National Science Foundation [1254200, 2125664] (J.E.), an Alfred P. Sloan Fellowship (J.E.), Kure-IT award from Kure It cancer research, Rose Hills Innovator Award, and the UCLA Jonsson Comprehensive Cancer Center and Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research Ablon Scholars Program."

Protocol Registration
Open Access
Paper is freely available to read
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Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025