DISCERN: deep single-cell expression reconstruction for improved cell clustering and cell subtype and state detection.

Publication Year: 2023

DOI:
10.1186/s13059-023-03049-x

PMCID:
PMC10510283

PMID:
37730638

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
Transparency Indicators
Click on green indicators to view evidence text
Core Indicators
Evidence found in paper:

"availability of data and materials code availability all original code has been deposited at github com [ 91 ] and zenodo [ 92 ] and is publicly available under the mit license. the expression table including the annotation is available from seuratdata ( https://github com/satijalab/seurat-data ) as panc8 seuratdata (v3 0 2) [ ].; availability of data and materials code availability all original code has been deposited at github com [ 91 ] and zenodo [ 92 ] and is publicly available under the mit license. availability of data and materials code availability all original code has been deposited at github com [ 91 ] and zenodo"

Evidence found in paper:

"the expression table including the annotation is available from seuratdata ( https://github com/satijalab/seurat-data ) as panc8 seuratdata (v3 0 2) [ ].; availability of data and materials code availability all original code has been deposited at github com [ 91 ] and zenodo [ 92 ] and is publicly available under the mit license."

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsThe authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests."

Evidence found in paper:

"Funding Open Access funding enabled and organized by Projekt DEAL. FH, RK, MM, PM, and SB were supported by the LFF-FV 78, EU ERare-3 Maxomod, SFB 1286 Z2, FOR 296, and FOR 5068 research grants. Further support was obtained from the UKE R3 reduction of animal testing grant. CE was supported by DFG ER 981/1-1 and the clinician scientist programme of university Hamburg, NG was supported by ERC StG-715271, and SHu was supported by ERC CoG-865466 and has an endowed Heisenberg-Professorship awarded by the Deutsche Forschungsgemeinschaft. SHa was funded by the BMBF STOP-FSGS-01GM1518C and SFB 1192 B08 research grants."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025