Dosage compensation of Z sex chromosome genes in avian fibroblast cells.

Publication Year: 2023

DOI:
10.1186/s13059-023-03055-z

PMCID:
PMC10510239

PMID:
37730643

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Evidence found in paper:

"availability of data and materials all transcriptomics data created in this work is deposited in geo ncbi (gse213253) as raw and processed expression tables with gene annotations [ 56 ]. fpkm values were counted with edger package for r batch effect correction for mds plot was done by using limma ("removebatcheffect" function) scrnaseq analysis of published hh4-hh7 and s4-s13 data [ ] was carried out by using cellranger-7 0 1 and galgal6 as a reference. availability of data and materials all transcriptomics data created in this work is deposited in geo ncbi (gse213253"

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Evidence found in paper:

"Declarations Ethics approval and consent to participateThis research does not involve human or adult animal subjects. Avian embryonic fibroblast collection was performed following the biosafety and bioethical regulations of the Kumamoto University. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding This work was supported by Japan Science and Technology Agency (JST) e-ASIA joint research project grant JPMJSC19E5 and by a Biotechnology for Bird Conservation grant from Revive & Restore during manuscript revision. RD, AS, and OG were supported by Ministry of Science and Higher Education of the Russian Federation grant 075-15-2021-1344."

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Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025