Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data.

"availability of data and materials the source codes for simulation and evaluations are available online under the mit license on github at https://github com/myylee/benchmark_sc_multiomic_integration [ 31 ] and on zenodo at https://zenodo org/record/8353265 [ 32 ]. availability of data and materials the source codes for simulation and evaluations are available online under the mit license on github at https://github com/myylee/benchmark_sc_multiomic_integration [ 31 ] and on zenodo at https://zenodo org/record/8353265 [ 32 ]. availability of data and materials the source codes for simulation and evaluations are available online under the mit license on github at https://github com/myylee/benchmark_sc_multiomic_integration [ 31 ] and on zenodo"

"availability of data and materials the source codes for simulation and evaluations are available online under the mit license on github at https://github com/myylee/benchmark_sc_multiomic_integration [ 31 ] and on zenodo at https://zenodo org/record/8353265 [ 32 ]."

"Declarations Ethics approval and consent to participateEthical approval was not needed for this study. Competing interestsM.L. received research funding from Biogen Inc. unrelated to the current manuscript. The other authors declare that they have no competing interests. Competing interests M.L. received research funding from Biogen Inc. unrelated to the current manuscript. The other authors declare that they have no competing interests."

"Funding This work was supported by the following grants: R01GM125301 (to M.L.), R01EY030192 (to M.L.), R01EY031209 (to M.L.), R01HL113147 (to M.L.), R01HL150359 (to M.L.), U01 DK112217 (to K.H.K.), and U01 DK123594 (to K.H.K.)."