Genome instability footprint under rapamycin and hydroxyurea treatments.

Authors:
Li J; Stenberg S; Yue JX; Mikhalev E; Thompson D and 2 more

Journal:
PLoS Genet

Publication Year: 2023

DOI:
10.1371/journal.pgen.1011012

PMCID:
PMC10653606

PMID:
37931001

Journal Information

Full Title: PLoS Genet

Abbreviation: PLoS Genet

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Evidence found in paper:

"plos publication stage vor-update-to-uncorrected-proof publication update 2023-11-16 data availability the sequencing data of the mutation accumulation lines is available in the sra (sequence read archive) database under the bioproject id of prjna880975 ( https://www ncbi nlm nih gov/bioproject/?; data availability the sequencing data of the mutation accumulation lines is available in the sra (sequence read archive) database under the bioproject id of prjna880975 ( https://www ncbi nlm nih gov/bioproject/? the paper makes a significant contribution to the field and is a good fit for plos genetics ---------------------------------------------------- data deposition if you have submitted a research article or front matter that has associated data that are not suitable for deposition in a subject-specific public repository (such as genbank or arrayexpress) one way to make that data available is to deposit it in the dryad digital repository .; journalid=pgenetics&manu=pgenetics-d-23-00878 more information about depositing data in dryad is available at http://www datadryad org/depositing . s1 table (xlsx data availability the sequencing data of the mutation accumulation lines is available in the sra (sequence read archive) database under the bioproject id of prjna880975"

Evidence found in paper:

"all the scripts are available on github ( https://github com/scan-o-matic/scanomatic ; last accessed september 1 2020)."

Evidence found in paper:

"The authors have declared that no competing interests exist."

Evidence found in paper:

"This work is supported by the National Natural Science Foundation of China (32000395 to JL and 32070592 to J-X Y), the Natural Science Foundation of Guangdong Province (2022A1515011873 to JL and 2022A1515010717 to J-X Y), the Guangdong Basic and Applied Basic Research Foundation (2019A1515110762 to J-X Y), the Guangdong Pearl River Talents Program (2021QN02Y168 to JL, 2019QN01Y183 to J-XY), Agence Nationale de la Recherche (ANR-15-IDEX-01), Fondation pour la Recherche Médicale (EQU202003010413), Association pour la Recherche sur le Cancer (ARCPJA32020070002320 to GL), and the Swedish Research Council (2018-03638 to JW). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."

Protocol Registration
Open Access
Paper is freely available to read
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Tool: rtransparent

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Last Updated: Aug 05, 2025