Evaluation of deep learning-based feature selection for single-cell RNA sequencing data analysis.

Publication Year: 2023

DOI:
10.1186/s13059-023-03100-x

PMCID:
PMC10638755

PMID:
37950331

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
Transparency Indicators
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Core Indicators
Evidence found in paper:

"deep learning feature selection methods were implemented in pytorch (1 11 0) and the source code is deposited in zenodo ( https://doi org/10 5281/zenodo 10027186 ) [ 34 ] and is freely available from https://github com/pyanglab/scdeepfeatures under a gpl-3 license [ 35 ]."

Evidence found in paper:

"deep learning feature selection methods were implemented in pytorch (1 11 0) and the source code is deposited in zenodo ( https://doi org/10 5281/zenodo 10027186 ) [ 34 ] and is freely available from https://github com/pyanglab/scdeepfeatures under a gpl-3 license [ 35 ]."

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsThe authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests."

Evidence found in paper:

"Funding This work is supported by a National Health and Medical Research Council (NHMRC) Investigator Grant (1173469) to P.Y."

Protocol Registration
Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025