Cytomulate: accurate and efficient simulation of CyTOF data.

Publication Year: 2023

DOI:
10.1186/s13059-023-03099-1

PMCID:
PMC10652542

PMID:
37974276

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
Transparency Indicators
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Core Indicators
Evidence found in paper:

"the cyanno (flowrepository id: fr-fcm-z2v9) [ 39 79 ] and lg (geo accession: gse99093; flowrepository id: fr-fcm-zy4p) [ 53 79 80 ] can be accessed from their respective publications. all the datasets as well as the source code used to generate the findings are available in zenodo ( https://doi org/10 5281/zenodo 10005508 ) and are released under the mit license [ 81 ]. availability of data and materials the levine_32dim levine_13dim [ 38 ] and samusik [ 52 ] datasets can be accessed from the hdcytodata package in r ( https://github com/lmweber/hdcytodata ) [ 40 ]. availability of data and materials the levine_32dim levine_13dim [ 38 ] and samusik [ 52 ] datasets can be accessed from the hdcytodata package in r ( https://github com/lmweber/hdcytodata ) [ 40 ]. the cyanno (flowrepository id: fr-fcm-z2v9"

Evidence found in paper:

"availability of data and materials the levine_32dim levine_13dim [ 38 ] and samusik [ 52 ] datasets can be accessed from the hdcytodata package in r ( https://github com/lmweber/hdcytodata ) [ 40 ].; all the datasets as well as the source code used to generate the findings are available in zenodo ( https://doi org/10 5281/zenodo 10005508 ) and are released under the mit license [ 81 ]."

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsDr. Tao Wang is one of the scientific co-founders of NightStar Biotechnologies, Inc. All remaining authors declare that they have no competing interests. Competing interests Dr. Tao Wang is one of the scientific co-founders of NightStar Biotechnologies, Inc. All remaining authors declare that they have no competing interests."

Evidence found in paper:

"Funding This study was supported by the National Institutes of Health (NIH) [NIH 1R01CA258584/TW, XW, U01AI156189/TW], Cancer Prevention Research Institute of Texas [CPRIT RP230363/TW, RP190208/TW, XW], and Southern Methodist University [Dean’s Research Council Award 2022/XW, TW]."

Protocol Registration
Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

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Last Updated: Aug 05, 2025