The intra-host evolutionary landscape and pathoadaptation of persistent <i>Staphylococcus aureus</i> in chronic rhinosinusitis.

"the assembled chromosomes and plasmids raw short and raw long read fastq files are accessible on the sequence read archive (sra) under the project code: prjna914892."

"we created complete chromosomal assemblies of s aureus using a custom snakemake pipeline [ ] available as a snaketool [ ] powered command line program called hybracter that can be accessed via https://github com/gbouras13/hybracter [ ].; to approximately assess codon usage differences between mscramm and non-mscramm genes a custom python script ' calc_ codon_ bias py' available in the crs_saureus_evolutionary_landscape github repository was used."

"Conflicts of interest The authors state that the study was conducted without any commercial and financial relationship that could be interpreted as a potential conflict of interest."

"Funding information The research was funded by an NHMRC investigator grant APP1196832 awarded to P.J.W. G.H. was supported by The University of Adelaide International Scholarships and a THRF Postgraduate Top-up Scholarship. S.V. was supported by a Passe and Williams Foundation senior fellowship."