Research Papers

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Erratum: <i>In silico</i> identification of bacterial seaweed-degrading bioplastic producers.
Leadbeater DR; Bruce NC; Tonon T.
Microb Genom (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
Identification of a novel CG307 sub-clade in third-generation-cephalosporin-resistant <i>Klebsiella pneumoniae</i> caus…
Selvaraj Anand S; Wu CT; Bremer J; Bhatti M; Treangen TJ; Kalia A; Shelburne SA; Shropshire WC.
Microb Genom (Unknown)
Published: 2024
5/6 Transparent
Data Code Funding Declared
Characterizing the diversity and commensal origins of <i>penA</i> mosaicism in the genus <i>Neisseria</i>.
Unitt A; Maiden M; Harrison O.
Microb Genom (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
A validated pangenome-scale metabolic model for the <i>Klebsiella pneumoniae</i> species complex.
Cooper HB; Vezina B; Hawkey J; Passet V; López-Fernández S; Monk JM; Brisse S; Holt KE; Wyres KL.
Microb Genom (Unknown)
Published: 2024
5/6 Transparent
Data Code Funding Declared
Closing the genome of unculturable cable bacteria using a combined metagenomic assembly of long and short sequencing re…
Hiralal A; Geelhoed JS; Hidalgo-Martinez S; Smets B; van Dijk JR; Meysman FJR.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
The long and short of it: benchmarking viromics using Illumina, Nanopore and PacBio sequencing technologies.
Cook R; Brown N; Rihtman B; Michniewski S; Redgwell T; Clokie M; Stekel DJ; Chen Y; Scanlan DJ; Hobman JL; Nelson A; Jones MA; Smith D; Millard A.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
A novel synthetic nucleic acid mixture for quantification of microbes by mNGS.
Wanghu H; Li Y; Huang J; Pu K; Guo F; Zhong P; Wang T; Yuan J; Yu Y; Chen J; Liu J; Chen JJ; Hu C.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Whole-Genome sequencing in routine <i>Mycobacterium bovis</i> epidemiology - scoping the potential.
Allen A; Magee R; Devaney R; Ardis T; McNally C; McCormick C; Presho E; Doyle M; Ranasinghe P; Johnston P; Kirke R; Harwood R; Farrell D; Kenny K; Smith J; Gordon S; Ford T; Thompson S; Wright L; Jones K; Prodohl P; Skuce R.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Corrigendum: 'Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria an…
De León ME; Wilson HS; Jospin G; Eisen JA.
Microb Genom (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
Beyond blast: enabling microbiologists to better extract literature, taxonomic distributions and gene neighbourhood inf…
Reed CJ; Denise R; Hourihan J; Babor J; Jaroch M; Martinelli M; Hutinet G; de Crécy-Lagard V.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Prevalence, antibiotic resistance, and genomic characterisation of <i>Campylobacter</i> spp. in retail chicken in Hanoi…
Huong LQ; Chisnall T; Rodgers JD; Cawthraw SA; Card RM.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Corrigendum: Genomic characterisation of a unique Panton-Valentine leucocidin-positive community-associated methicillin…
Ramsay JP; Parahitiyawa N; Mowlaboccus S; Mullally CA; Yee NWT; Shoby P; Colombi E; Tan HL; Pearson JC; Coombs GW.
Microb Genom (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
pyngoST: fast, simultaneous and accurate multiple sequence typing of <i>Neisseria gonorrhoeae</i> genome collections.
Sánchez-Busó L; Sánchez-Serrano A; Golparian D; Unemo M.
Microb Genom (Unknown)
Published: 2024
5/6 Transparent
Data Code Funding Declared
Strain features of pneumococcal isolates in the pre- and post-PCV10 era in Pakistan.
Javaid N; Lo SW; Nisar MI; Basharat A; Jaleel H; Rasool K; Sultana Q; Kabir F; Hotwani A; Breiman RF; Bentley SD; Shakoor S; Mirza S.
Microb Genom (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
Systematic analysis of the codon usage patterns of African swine fever virus genome coding sequences reveals its host a…
Wang Y; Chi C; Zhang J; Zhang K; Deng D; Zheng W; Chen N; Meurens F; Zhu J.
Microb Genom (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
Phenotypic and genotypic characterization of <i>Marinobacterium weihaiense</i> sp. nov. and <i>Marinobacterium marinum<…
Liu XJ; Zhu KL; Ye YQ; Han ZT; Tan XY; Du ZJ; Ye MQ.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Prophages: an integral but understudied component of the human microbiome.
Inglis LK; Roach MJ; Edwards RA.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of mosquitoes.
Mirza JD; de Oliveira Guimarães L; Wilkinson S; Rocha EC; Bertanhe M; Helfstein VC; de-Deus JT; Claro IM; Cumley N; Quick J; Faria NR; Sabino EC; Kirchgatter K; Loman NJ.
Microb Genom (Unknown)
Published: 2024
5/6 Transparent
Data Code Funding Declared
The macronuclear genomic landscape within <i>Tetrahymena thermophila</i>.
Derelle R; Verdonck R; Jacob S; Huet M; Akerman I; Philippe H; Legrand D.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Insights gained from sequencing Australian non-invasive and invasive <i>Streptococcus pyogenes</i> isolates.
Butler TAJ; Story C; Green E; Williamson KM; Newton P; Jenkins F; Varadhan H; van Hal S.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
A practical guide and Galaxy workflow to avoid inter-plasmidic repeat collapse and false gene loss in Unicycler's hybri…
Schäfer L; Jehle JA; Kleespies RG; Wennmann JT.
Microb Genom (Unknown)
Published: 2024
5/6 Transparent
Data Code Funding Declared
Multiple independent losses of sporulation and peptidoglycan in the <i>Mycoplasmatales</i> and related orders of the cl…
Field CJ; Bowerman KL; Hugenholtz P.
Microb Genom (Unknown)
Published: 2024
3/6 Transparent
Funding Declared
A recently collected <i>Xanthomonas translucens</i> isolate encodes TAL effectors distinct from older, less virulent is…
Gutierrez-Castillo DE; Barrett E; Roberts R.
Microb Genom (Unknown)
Published: 2024
5/6 Transparent
Data Code Funding Declared
Emergence and genomic characteristics of multi-drug-resistant <i>Salmonella</i> in pet turtles and children with diarrh…
Wang W; Liu F; Li H; Li M; Hu Y; Li F; Xiao J; Dong Y.
Microb Genom (Unknown)
Published: 2024
4/6 Transparent
Data Funding Declared
Genomic characterization of <i>Bordetella pertussis</i> in South Africa, 2015-2019.
Moosa F; du Plessis M; Weigand MR; Peng Y; Mogale D; de Gouveia L; Nunes MC; Madhi SA; Zar HJ; Reubenson G; Ismail A; Tondella ML; Cohen C; Walaza S; von Gottberg A; Wolter N.
Microb Genom (Unknown)
Published: 2023
4/6 Transparent
Data Funding Declared