A super-pangenome of the North American wild grape species.

"raw sequencing reads were deposited on ncbi under the bioproject prjna984685 [ ] and previously sequenced reads [ ] were retrieved from the bioprojects prjna731597 [ ] and prjna842753 [ ].; availability of data and materials all the raw sequencing data are available as an ncbi bioproject under the accession number prjna984685 [ 84 ]. the source code used to build and analyze the pangenome was released on github [ ] and referenced on zenodo [ ].; optical maps genome files and pangenome graphs were uploaded on zenodo [ 116 ].; code and scripts used in the construction and analysis of the pangenome are available on github under mit license [ 78 ] and on zenodo [ 79 ]. availability of data and materials all the raw sequencing data are available as an ncbi bioproject under the accession number prjna984685"

"the structural annotation of the protein-coding gene loci was performed using an extensive ab initio prediction pipeline described in cochetel et al [ ] available at https://github com/andreaminio/annotationpipeline-evm_based-dclab .; the source code used to build and analyze the pangenome was released on github [ ] and referenced on zenodo [ ].; code and scripts used in the construction and analysis of the pangenome are available on github under mit license [ 78 ] and on zenodo [ 79 ]."

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsThe authors declare that they have no competing interests. Competing interests The authors declare that they have no competing interests."

"Funding This work was supported by the NSF grant #1741627 attributed to B.S.G. and D.C., and funds to D.C. from the E.&J. Gallo Winery, and the Louis P. Martini Endowment in Viticulture. Sequencing was performed by the DNA Technology Core, Genome Center at UC Davis."