SOCfinder: a genomic tool for identifying social genes in bacteria.

Authors:
Belcher LJ; Dewar AE; Hao C; Katz Z; Ghoul M and 1 more

Journal:
Microb Genom

Publication Year: 2023

DOI:
10.1099/mgen.0.001171

PMCID:
PMC10763506

PMID:
38117204

Journal Information

Full Title: Microb Genom

Abbreviation: Microb Genom

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Microbiology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Data Sharing
Evidence found in paper:

"socfinder opens up a number of exciting directions for future research and is available to download from https://github com/lauriebelch/socfinder cooperation cooperative gene kin selection relatedness social gene openaccessembargo 0 all code and associated files are available at https://github com/lauriebelch/socfinder .; socfinder version 1 0 is available as an easy-to-use command line tool with tutorials r scripts and python scripts freely available at github com/lauriebelch/socfinder.; the full list of 321 cooperative ko terms is available at https://github com/lauriebelch/socfinder/ .; our list includes beta-lactamases and metallophores such as siderophores which allow bacteria to obtain iron and other metal ions from their hosts [ ] (available at https://github com/lauriebelch/socfinder/ )."

Evidence found in paper:

"Conflicts of interest The authors declare that there are no conflicts of interest."

Evidence found in paper:

"Funding information This work was supported by the European Research Council (834164: LJB, AED and SAW; SESE: MG) and the Biotechnology and Biological Sciences Research Council (BBSRC Oxford Interdisciplinary Bioscience Doctoral Training Partnership ZK)."

Protocol Registration
Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025