A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response.

Publication Year: 2024

DOI:
10.1186/s12864-023-09894-1

PMCID:
PMC10759348

PMID:
38166627

Journal Information

Full Title: BMC Genomics

Abbreviation: BMC Genomics

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
4/6
66.7% Transparent
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Core Indicators
Evidence found in paper:

"raw transcriptome data will be available on ncbi genbank (bioproject: prjna966699). availability of data and materials assembly and raw hifi reads can be found on ncbi (bioproject: prjna966699"

Code Sharing
Evidence found in paper:

"Declarations Ethics approval and consent to participateNo collections were undertaken in protected regions or of protected species, thus no permits were required for fieldwork. In lieu of voucher specimens, observations of the initial plant, alongside the users who identified it, from which seeds were collected in 2016 can be found on iNaturalist (https://www.inaturalist.org/observations/156947070). All methods were carried out in accordance with relevant institutional, national, and international guidelines and legislation. Consent to publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding Funding was provided by an NSF postdoctoral research fellowship in biology to JKG (#2010772)."

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Open Access
Paper is freely available to read
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Assessment Info

Tool: rtransparent

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Last Updated: Aug 05, 2025