Prophages: an integral but understudied component of the human microbiome.

Authors:
Inglis LK; Roach MJ; Edwards RA.

Journal:
Microb Genom

Publication Year: 2024

DOI:
10.1099/mgen.0.001166

PMCID:
PMC10868603

PMID:
38264887

View on PubMed View on PMC View Publisher
Journal Information

Full Title: Microb Genom

Abbreviation: Microb Genom

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Microbiology

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Related Papers from Same Journal
A novel synthetic nucleic acid mixture for quantification of microbes by mNGS.
Wanghu H; Li Y; Huang J and 10 more (2024) - Transparency Score: 4/6
A practical guide and Galaxy workflow to avoid inter-plasmidic repeat collapse and false gene loss …
Schäfer L; Jehle JA; Kleespies RG and 1 more (2024) - Transparency Score: 5/6
A recently collected <i>Xanthomonas translucens</i> isolate encodes TAL effectors distinct from old…
Gutierrez-Castillo DE; Barrett E; Roberts R. (2024) - Transparency Score: 5/6
A validated pangenome-scale metabolic model for the <i>Klebsiella pneumoniae</i> species complex.
Cooper HB; Vezina B; Hawkey J and 6 more (2024) - Transparency Score: 5/6
Beyond blast: enabling microbiologists to better extract literature, taxonomic distributions and ge…
Reed CJ; Denise R; Hourihan J and 5 more (2024) - Transparency Score: 4/6
View All Papers from This Journal
Transparency Score
4/6
66.7% Transparent
Transparency Indicators
Click on green indicators to view evidence text
Core Indicators
Evidence found in paper:

"all 949 935 publicly accessible bacterial genomes (as of 1 june 2022) listed in the dataset 'ncbi genome assemblies summary archive 20220601' (key resources) were downloaded from genbank for analysis on the flinders university hpc cluster [ ]. all the predicted prophages from all of the genomes are available from figshare (key resources 'prophage predictions')."

Code Sharing
Evidence found in paper:

"Conflicts of interest The authors declare no competing interests."

Evidence found in paper:

"Funding information Awards from the NIH NIDDK RC2DK116713 and the Australian Research Council DP220102915 to R.A.E. supported this research. Flinders University Impact Seed Funding for Early Career Researchers supported M.J.R."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025