High-fidelity (repeat) consensus sequences from short reads using combined read clustering and assembly.

"availability of data and materials the datasets together with the accession codes are as follows: beta corolliflora (wgs illumina short reads): err6110441 (prjeb45680) [ 47 ] the according repeatexplorer2 run is available at: doi: 10 5281/zenodo 7821055 [ 4 ]; beta corolliflora (wgs ont long reads): err10684093 - err10684133 (prjeb56520) [ 48 ]; beta vulgaris (repeat data base): 10 5281/zenodo 8255813; beta vulgaris (eccdna-seq illumina short reads): err6004146 (prjeb45524) [ 17 ]; beta vulgaris (wgs illumina short reads): srr869631 (prjna41497) [ 49 ]; artemisia annua & tragopogon porrifolius (wgs illumina short reads): err11535563 and err11535566 (prjeb63080) [ 43 ]. availability of data and materials the datasets together with the accession codes are as follows: beta corolliflora (wgs illumina short reads): err6110441 (prjeb45680) [ 47 ] the according repeatexplorer2 run is available at: doi: 10 5281/zenodo 7821055 [ 4 ]; beta corolliflora (wgs ont long reads): err10684093 - err10684133 (prjeb56520) [ 48 ]; beta vulgaris (repeat data base): 10 5281/zenodo 8255813; beta vulgaris (eccdna-seq illumina short reads): err6004146 (prjeb45524) [ 17 ]; beta vulgaris (wgs illumina short reads): srr869631 (prjna41497) [ 49 ]; artemisia annua & tragopogon porrifolius (wgs illumina short reads): err11535563 and err11535566 (prjeb63080) [ 43 ]. availability of data and materials the datasets together with the accession codes are as follows: beta corolliflora (wgs illumina short reads): err6110441 (prjeb45680"

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

"Funding Open Access funding enabled and organized by Projekt DEAL. Open Access funding was enabled and organized by the Sächsische Staats- und Universitätsbibliothek and the Technische Universität Dresden. This work was partially funded by Bundesministerium für Bildung und Forschung (BMBF 031B1221A) and Deutsche Forschungsgemeinschaft (DFG 433081887), awarded to TH (HE 7194/2 − 1). The funders had no role in the design of the study, data collection, data analysis, interpretation of results, or writing of the paper."