ECDEP: identifying essential proteins based on evolutionary community discovery and subcellular localization.

Authors:
Ye C; Wu Q; Chen S; Zhang X; Xu W and 3 more

Journal:
BMC Genomics

Publication Year: 2024

DOI:
10.1186/s12864-024-10019-5

PMCID:
PMC10821549

PMID:
38279081

Journal Information

Full Title: BMC Genomics

Abbreviation: BMC Genomics

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Evidence found in paper:

"availability of data and materials the code and data supporting the conclusions of this article are openly accessible in the github repository at https://github com/lionkingahau/ecdep ."

Evidence found in paper:

"availability of data and materials the code and data supporting the conclusions of this article are openly accessible in the github repository at https://github com/lionkingahau/ecdep . it's important to note that all the machine learning and deep learning methods we compare undergo identical preprocessing steps thus ensuring the fairness and consistency of the experimental setup 11 \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p=\left(1-\frac mn\right)^k$$\end{document} p = 1 - m n k for details on the experimental environment and package requirements please access our github repository ( https://github com/lionkingahau/ecdep ) or refer to the supplementary materials: table s6 ."

Evidence found in paper:

"Declarations Ethics approval and consent to participateNot applicable. Consent for publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding This work was supported by funds from the Anhui Provincial Department of Education University Natural Science Research Project (2022AH040122, 2023AH040132), the Open Fund of State Key Laboratory of Tea Plant Biology and Utilization (SKLTOF20150103). The funding agencies provided funds for the article processing fee and the corresponding author’s work on the research presented in this manuscript."

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Open Access
Paper is freely available to read
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Last Updated: Aug 05, 2025