LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants.

Journal Information

Full Title: BMC Genomics

Abbreviation: BMC Genomics

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
Transparency Indicators
Click on green indicators to view evidence text
Core Indicators
Evidence found in paper:

"additional file 9. a zip"

Evidence found in paper:

"the perl scripts used for the lustr pipeline are available on github ( https://github com/jlugithub/lustr/releases/tag/str )."

Evidence found in paper:

"Declarations Ethics approval and consent to participateGenomic sequence data used in this study were either publicly available or from individuals who were consented to allow for their de-identified data to be used to develop analytical tools to analyze and interpret genomic data under the guidance of local institutional review boards. Consent for publicationNot applicable. Competing interestsThe authors declare no competing interests. Competing interests The authors declare no competing interests."

Evidence found in paper:

"Funding This work was funded by R01-NS094596."

Protocol Registration
Open Access
Paper is freely available to read
Additional Indicators
Replication
Novelty Statement
Assessment Info

Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025