Mosaic loss of Y chromosome is associated with aging and epithelial injury in chronic kidney disease.

Authors:
Wilson PC; Verma A; Yoshimura Y; Muto Y; Li H and 3 more

Journal:
Genome Biol

Publication Year: 2024

DOI:
10.1186/s13059-024-03173-2

PMCID:
PMC10823641

PMID:
38287344

Journal Information

Full Title: Genome Biol

Abbreviation: Genome Biol

Country: Unknown

Publisher: Unknown

Language: N/A

Publication Details

Subject Category: Genetics

Available in Europe PMC: Yes

Available in PMC: Yes

PDF Available: No

Transparency Score
5/6
83.3% Transparent
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Core Indicators
Evidence found in paper:

"raw sequencing data for single-cell multiomes and snatac-seq are deposited in geo under accession number gse232222 [ 76 ].; raw sequencing and processed data for spatial visium libraries are deposited under accession number gse232431 [ 77 ]. code availability all of the code used to generate and analyze data in this manuscript is available on github ( https://github com/p4rkerw/wilson_gbio_2024 ) [ 74 ] and zenodo [ 75 ] under an open source compliant apache license version 2 0. code availability all of the code used to generate and analyze data in this manuscript is available on github ( https://github com/p4rkerw/wilson_gbio_2024 ) [ 74 ] and zenodo [ 75 ] under an open source compliant apache license version 2 0."

Evidence found in paper:

"the details of each analysis are outlined in the methods section and all of the code has been made publicly available on github.; code availability all of the code used to generate and analyze data in this manuscript is available on github ( https://github com/p4rkerw/wilson_gbio_2024 ) [ 74 ] and zenodo [ 75 ] under an open source compliant apache license version 2 0."

Evidence found in paper:

"Declarations Ethics approval and consent to participateThis research complies with all relevant ethical regulations and has been approved by the Washington University Institutional Review Board. Competing interestsB.D.H. is a consultant for Janssen Research & Development, LLC, Pfizer, and Chinook Therapeutics and holds equity in Chinook Therapeutics and grant funding from Janssen Research & Development, LLC, and Pfizer; all interests are unrelated to the current work. Competing interests B.D.H. is a consultant for Janssen Research & Development, LLC, Pfizer, and Chinook Therapeutics and holds equity in Chinook Therapeutics and grant funding from Janssen Research & Development, LLC, and Pfizer; all interests are unrelated to the current work."

Evidence found in paper:

"Funding These studies were supported by an NIH K08 Career Development Award (DK126847) to P.C.W. These studies were also supported by an NIH R01 (DK103740) and a Chan Zuckerberg Initiative seed network grant (CZF2019-002430) to B.D.H. The results are in part based upon data generated by KPMP: DK133081, DK133091, DK133092, DK133093, DK133095, DK1330971, DK114866, DK114908, DK133090, DK133113, DK133766, DK133768, DK114907, DK114920, DK114923, DK114933, DK114886. https://www.kpmp.org. KPMP data was downloaded on 2/23/2023."

Protocol Registration
Open Access
Paper is freely available to read
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Tool: rtransparent

OST Version: N/A

Last Updated: Aug 05, 2025