pyngoST: fast, simultaneous and accurate multiple sequence typing of <i>Neisseria gonorrhoeae</i> genome collections.

"raw data are available at the ena project prjeb34068."

"typing results on 2375 gonococcal genomes revealed that ng-star best represents the genomic population structure of n gonorrhoeae highlighting the importance of antimicrobial use and amr on the evolution of this pathogen pyngost is written in python 3 and is available from github under the gpl-3 0 license ( https://github com/leosanbu/pyngost ).; we also provide an evaluation of the concordance of these typing schemes with the gonococcal population structure obtained from wgs pyngost has been modularly implemented in python 3 8 under a gnu gplv3 licence and is available from github ( https://github com/leosanbu/pyngost ).; installation can be performed from the source code or from pypi using pip pyngost is written as an open-source tool containing a main script pyngost py where the principal functions are contained in and called from pyngost_utils py .; there is still not a regular publicly available update of ng-star ccs but the latest run (from may 2023) is available from the pyngost github repository and will be posteriorly further updated and shared with the scientific community."

"Conflicts of interest The author(s) declare that there are no conflicts of interest."

"Funding information This work was supported by the Spanish Ministry of Science and Innovation (PID2020-120113RA-I00/AEI/10.13039/501100011033) and Generalitat Valenciana (CDEI-06/20-B, Conselleria de Sanitat Universal i Salut Pública; and CISEJI/2022/66, Conselleria d’Innovació, Universitats, Ciència i Societat Digital), Valencia, Spain. A.S.S. was the recipient of a predoctoral fellowship from the Spanish Ministry of Science and Innovation (PRE2021-098199)."