Transposon dynamics in the emerging oilseed crop Thlaspi arvense.

"datasets were uploaded to zenodo under the doi: 10 5281/zenodo 6372331 .; datasets were uploaded to zenodo under the doi: 10 5281/zenodo 6372331 .; reviewer #1: yes: leandro quadrana reviewer #3: no ---------------------------------------------------- data deposition if you have submitted a research article or front matter that has associated data that are not suitable for deposition in a subject-specific public repository (such as genbank or arrayexpress) one way to make that data available is to deposit it in the dryad digital repository .; journalid=pgenetics&manu=pgenetics-d-23-00891r1 more information about depositing data in dryad is available at http://www datadryad org/depositing . s1 table (xlsx data availability code used for analysis and figures can be found at: https://github com/acontrerasg/tarvense_transposon_dynamics . sequencing reads can be found at the european nucleotide archive (ena) under accession number prjeb62093"

"the workflow was based on custom bash and python scripts available at https://github com/acontrerasg/tarvense_transposon_dynamics .; the workflow was based on custom bash and python scripts available at https://github com/acontrerasg/tarvense_transposon_dynamics .; the code to run gwa and the described enrichment analysis is available on github ( https://github com/dario-galanti/multipheno_gwas/tree/main/gemmagwas ).; the workflow was based on custom bash and python scripts available at https://github com/acontrerasg/tarvense_transposon_dynamics ."

"I have read the journal’s policy and the authors of this manuscript have the following competing interests: D.W. holds equity in Computomics, which advises breeders. D.W. advises KWS SE, a plant breeder and seed producer. All the other authors have declared that no competing interests exist.
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"The study was supported by Marie Skłodowska Curie ETN EpiDiverse (EU Horizon 2020 Grant Agreement No. 764965; C.B., O.B., D.W.), the European Research Council (Grant Agreement No. 716823 “FEAR-SAP”; C.B.), the Novo Nordisk Foundation Novozymes Prize and the Max Planck Society (D.W.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."