TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting.

"reviewer #1: no reviewer #2: yes: aylwyn scally reviewer #3: no ---------------------------------------------------- data deposition if you have submitted a research article or front matter that has associated data that are not suitable for deposition in a subject-specific public repository (such as genbank or arrayexpress) one way to make that data available is to deposit it in the dryad digital repository .; journalid=pgenetics&manu=pgenetics-d-23-00699r1 more information about depositing data in dryad is available at http://www datadryad org/depositing . plos publication stage vor-update-to-uncorrected-proof publication update 2024-02-21 data availability the python package for trails can be downloaded and installed from pip ( https://pypi org/project/trails-rivasiker/ ) and the source code can be browsed at https://github com/rivasiker/trails .; data availability the python package for trails can be downloaded and installed from pip ( https://pypi org/project/trails-rivasiker/ ) and the source code can be browsed at https://github com/rivasiker/trails ."

"plos publication stage vor-update-to-uncorrected-proof publication update 2024-02-21 data availability the python package for trails can be downloaded and installed from pip ( https://pypi org/project/trails-rivasiker/ ) and the source code can be browsed at https://github com/rivasiker/trails .; data availability the python package for trails can be downloaded and installed from pip ( https://pypi org/project/trails-rivasiker/ ) and the source code can be browsed at https://github com/rivasiker/trails ."

"The authors have declared that no competing interests exist."

"This work was supported by the Novo Nordisk Foundation (NNF18OC0031004 to MHS) and the Independent Research Fund Denmark, Natural Sciences (6108-00385 to MHS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."